NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209146_1025671

Scaffold Ga0209146_1025671


Overview

Basic Information
Taxon OID3300027175 Open in IMG/M
Scaffold IDGa0209146_1025671 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus LIZARD ISLAND (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3114
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006211Metagenome378Y
F019789Metagenome227Y
F054401Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0209146_10256713F054401AGTAGGVHTVSQWPNLRHITEPLGGAVGLLEAVSFKEPRESVCRGRTADARG
Ga0209146_10256714F006211AGGAGVSAEVELRMLEGSEFQTVGAAMLKPCEAKVVQTRGTDRRLVLAERRERVGM
Ga0209146_10256716F019789N/AMDIIRQDLKNMATSWEEAKELVTDRAEWHQRVAQTIHQGDVE

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