Scaffold Ga0208955_100398

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208955_100398

Scaffold Ga0208955_100398

Overview

Basic Information
Taxon OID	3300027179 Open in IMG/M
Scaffold ID	Ga0208955_100398 Open in IMG/M
Source Dataset Name	Bulk soil microbial communities from Harvard Forest, USA - 2Bulk_unsorted metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	564
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Bulk Soil → Rhizosphere And Bulk Soil Microbial Communities From Harvard Forest, Usa

Source Dataset Sampling Location
Location Name	Harvard Forest, Massachusetts, USA
Coordinates	Lat. (^o)	42.5502	Long. (^o)	-72.1737	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008217	Metagenome / Metatranscriptome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208955_1003981	F008217	N/A	VDGRAVGERFVSDDIELQVLMTGKSTLELIEVRKAGFGMPRLKDGETAVIGHFGIEVDDLDAAKAELTRRGVALEGETDTEAVRFIFTVPQTTFGVTVQLMDYKGRRKGV

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