NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208997_1010824

Scaffold Ga0208997_1010824


Overview

Basic Information
Taxon OID3300027181 Open in IMG/M
Scaffold IDGa0208997_1010824 Open in IMG/M
Source Dataset NameForest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1214
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameEl Dorado National Forest, Georgetown, California, USA
CoordinatesLat. (o)38.88Long. (o)-120.64Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037137Metagenome / Metatranscriptome168Y
F061299Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0208997_10108243F061299GAGMSDNVPDPDVKKRAEFISEVLTTVLEEGGYDSAVAQARRFLANNTPAQMEQMKPHFSSLALEFRILAGFFKD
Ga0208997_10108244F037137AGGAMDELTPDQEKAVAATVGAIQRIAMAIVAFPKEQRATHYALVRRNFEAAIKEFSIEGEMAQTWLDKTMIGIQSLVTEIEVGGGAAGGKA

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