NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208921_1012085

Scaffold Ga0208921_1012085


Overview

Basic Information
Taxon OID3300027188 Open in IMG/M
Scaffold IDGa0208921_1012085 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1364
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054867Metagenome / Metatranscriptome139Y
F070122Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0208921_10120851F054867GGAGLESNVALLRAASGLERLMAGAPVGPVKDSNVAQISAFLYHQANVLAKLDSDAAFKKLFKKTIFDSINKEFGQYIDAKARVKPNSLHHVYEWNKTGQPTSRLFLLKQIDSSGLSFKIDSNFILSRSAVPSRNKKQKKKYIFANKADVMEAGLPVIIRPKSAERLVFELDGITVFMPKGSSVTVKSPGGKASSNQFKLAYSQFFS
Ga0208921_10120852F070122N/AMSLATSLMPLQLDIYLQSDTQDENTGAIKKDWAYSKTMQCSAKGIISNSGTGRGGDRQTLNTKYSNEQMLEIRSVDQITYRDKITNIRDIKGNIVWKELDFPSETPTVFEVVSSTPITDPFGNILAYNSIVKRSENQQIGI

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