NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208673_1004455

Scaffold Ga0208673_1004455


Overview

Basic Information
Taxon OID3300027192 Open in IMG/M
Scaffold IDGa0208673_1004455 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2767
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081339Metagenome114N
F087197Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208673_10044551F081339N/AVNKTVTITATSNPSAGVYTITVDDVKWIQPSIVLSIGNNDYTVSSISGCVITLSGSAAIVVTSFTLPTVYFFHGTVKETNITLTKRQFDTQKTPLVYLLEIFSERFNEDVDEFERVSDLRLFFLTHANFEAWEVDDFYTNSIKPMQRLVQHYIDTLNKQVRVQQIRDYELTNLSRFGVYVNNKGFESTLFEDKLSGVELRISLELRKPTDCGGYC
Ga0208673_10044555F087197GAGMPIYNWLKWHEDKDDKWLSKKGKAGLLTSYFGNQVMTQFIDRFGFSETFIKALEKEKELVLLQARMAITEDRSLSAFIKICQIEIEALRAETQDRSDFYEIKGVLEHEMGFQI
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