Scaffold Ga0208308_1004227

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208308_1004227

Scaffold Ga0208308_1004227

Overview

Basic Information
Taxon OID	3300027228 Open in IMG/M
Scaffold ID	Ga0208308_1004227 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1550A-3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1899
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2328	Long. (^o)	-123.878	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066806	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208308_10042271	F066806	AGGA	MSMEAYAKIGENLNSIVKAKNYQVAPLYPKGKPGTNDKSTREFRLQLIDKNRDTSADVIAHLKMQLRKDTSLESVTFNDISPNSSKFPSYGFTFDGLKYDIIIARGANAGEKFEVRTVKTLDNFFKTRTDNETSEVVTLMSESYAPFANAEIVGAKQRTGATKKEGIPIDKLGAIIGDIILTDNQNNEWYISLKDINGNTFSSYSGAASLFNSAGDLQPNSAGAKFLNTFGVDLNRVQEGFDERGSINKVRPKLAVSKASAREIEKIFNRAWGMNYFYVRRMRTGWKVFWLGKTKLDKLSQN

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