Scaffold Ga0208807_1019984

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208807_1019984

Scaffold Ga0208807_1019984

Overview

Basic Information
Taxon OID	3300027239 Open in IMG/M
Scaffold ID	Ga0208807_1019984 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1555B-3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1006
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2024	Long. (^o)	-123.9409	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066787	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208807_10199843	F066787	GAGG	MQSLIKLLKEEYSLDNEILRNRVQQMRGLHSLIMQKGMEAPDRSELLDKIRDIEDRIEAHLVNRAKGESQRRLFTSNPSQIDNDVRKEMIRLRTRREAQDKYRSMKLS

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