NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209303_1001631

Scaffold Ga0209303_1001631


Overview

Basic Information
Taxon OID3300027262 Open in IMG/M
Scaffold IDGa0209303_1001631 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13315
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023776Metagenome208Y
F055389Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209303_10016312F055389AGGVPDLGLPGGTRKLTVKRLLRRALRHYEIAVTLGPCMRAMQSCRPVPDTGAGVNIMRNSVLPTNWMACAEKLTTLPRIRDANNNRLVTKYAIHLYVDTGGVRHFDRFLVSDNWSVPCILGTEFIEQNIEEILPCLREIVWQEHVRCTEELPRPSTILACLNDSAWDRHWQDELAGVRACKQVRVN
Ga0209303_10016316F023776N/AVIRLDEEPLLVEEVPQLEDSPHDVEAFALLGGVDFRCSSESSAPISDRMKQLTRFILEEGTPDLVGACVNVDDERPVSLWQGKYRWAQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.