NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209303_1002422

Scaffold Ga0209303_1002422


Overview

Basic Information
Taxon OID3300027262 Open in IMG/M
Scaffold IDGa0209303_1002422 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9699
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053751Metagenome140Y
F061493Metagenome131Y
F066406Metagenome126Y
F075609Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209303_100242213F075609N/AVHSSTWQVPIAFVSPRRFTPVAIERHAAGTDPGEIVTPGRAKENFLQRLDSLIPLVRDTMEKAQARYKRAFDKRVQARREALRVGDWVFVKSHENQGGKLVLKTLGPYQIMKTDGRRPTIESDDGIRPINGNHATRAPEPPEYPSDTR
Ga0209303_10024222F066406AGGAGGVSLEGVWGRVSEGLRRTDGIRGRGVSVASRPSTRASKLPVTQLVFVARDVSTRSTPCVCALRSFLPGRVFLDSTIRRHGLARPPPNSVGWAERVVTLCGAAGEEGDSTFLGAVAVRRPAAGGT
Ga0209303_10024224F053751N/AVPPKIVVNHPYYRMMFDCETYALHNKSVVYTRRQARTLGRRKKEVAQSFGVRDEWDGSPRAKVFQPLRKLAMACDDNDISECEAFNILQDFTKEPLKSEVMMVMPTCRAGNPGEVTSYLELINWMLRRHVDEASVATLVETLNVAVQRDDEDELWFAERLRRLNTECGFVYGEGPLKGRFVEGVHRAARATMRERNTPGMTMAELARVAQTKGDEHRWLRLEQLKERTKEREVLAEEARLRRQARAAALPQVAGGSRGYQPRDAPVRAIGGRGL
Ga0209303_10024225F061493GGAMPVRIRSQPQGIRPRDAPIPKGVDGRNVVAILTCSNYQVASRVWLDAGHELALRVMVDTGSCVSLVREALLPPEMTVAPLDAATAQLFNVNGGLLPITGTVTLTVRVGTYSIPVTCGVVRGRSVPLLLGTDYTDIHVPTFADPRGTSRY
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