NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209303_1003066

Scaffold Ga0209303_1003066


Overview

Basic Information
Taxon OID3300027262 Open in IMG/M
Scaffold IDGa0209303_1003066 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8089
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F024469Metagenome205Y
F045507Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209303_10030661F013269AGGAGVVTANAFFLTVNVNDKRGGIRIRVDDHEGSKGLALQLVLLIVVGRKVVIADLDVRIPGCDPVVEVTFVTLLRPTQGLKYDRNPPAKAGHELAFASTG
Ga0209303_10030663F024469N/AMERNAARADCPPVCLKADCLPNRASPELRRQPDDVQPVADNKNLDMSSLVAVMANTTLQCEFESASGEDHAQVMRRWAVAETNVEAIDVKVDVVLAGADDEE
Ga0209303_10030664F045507GAGGMGGMKIDKLTGTNFHEWRQCIKIVQALRDLEDMLDEDGKPTDVEDRECALWNRQDTQARHRRAHPWV
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