NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209303_1005323

Scaffold Ga0209303_1005323


Overview

Basic Information
Taxon OID3300027262 Open in IMG/M
Scaffold IDGa0209303_1005323 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5349
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100274Metagenome102Y
F104364Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209303_10053232F104364GAGMLIQFPSPVRRATACRSPDYQVTLRLPLHTFRGPGAKPHGQVLLSDQFRQTLLTTSLEVVQAIIYDRVHDAGIYINLAHSFTQSMTTIPRMIVLRRQDSPEHDPQDDLFPASGQISARYAERSEPANRND
Ga0209303_10053235F100274GGAMHTENHCTAQIPSLWGVALRPWCGHCQAHSHLGRDQCYASQAVSVLRMSDTKQQSTTRRENVAILCVRGGRPRRGNILTMHVFLRDGDVGIILNSAESHQSLDAAEVRSTRHNVFLHFV
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