NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209303_1006274

Scaffold Ga0209303_1006274


Overview

Basic Information
Taxon OID3300027262 Open in IMG/M
Scaffold IDGa0209303_1006274 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4747
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006930Metagenome361Y
F027093Metagenome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0209303_10062741F006930GGAVTRMVPHIVHLQDVVKLHTFVLGHLGALILACFGFNLRFALVAFDLVSDSVWCEGVGVGVSARGGSTWAGGDYLRSALGWERRANLRTT
Ga0209303_10062743F027093GAGVRTRHLLCVRGGKRVTAGIGPSPPQPVHSARGVDVMPVRIQCPPKGIRPRDAPLPKGVGVCNVVAILTGSNNQVACRVWRDAGRESGPCIIFDTGSRVSLVREALLPPEMKVAPLDVATAQFLDGNGGLLPIKGTVTLTVRVGTYSTPVTCEVVCGMSVPLLRGTDCTEVHVPNICGLKAYIRLLHGFRVPILRRGKTVSYARMDQLKSGAASEADTKVRLAHEVVLPPRSRGYVPVQTSFQGNVVITQRHRLYQRHRVHDATGTMDCTANHT
Ga0209303_10062746F006930GGAVTLIVPHMVHLQDVVKLHTFVLGHLGALILACFGFNLRFALVAFDLVSDSIWCEGVGARGGCTLDGGDYLRDALG
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