NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209303_1008914

Scaffold Ga0209303_1008914


Overview

Basic Information
Taxon OID3300027262 Open in IMG/M
Scaffold IDGa0209303_1008914 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3651
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F048070Metagenome148Y
F104363Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209303_10089142F013269AGGAMVTADTFFLAVNVNDKRGGIRVCVDDHEGSNGFALQLFLPIVVGRVDVVADLDVRIAGCDPMVEVSFVTLLRHTQGLDYDGDLLAQAGHELAFAS
Ga0209303_10089143F104363GAGMDNSVTGNMDMLDSGYPRGVHDDVGHGCEPDLSATSSRWRLPFVPWYVLLLLAKKAHHLVAWEILQGFPGVVYRPLVEPAHLSATAVASLA
Ga0209303_10089144F048070AGGMAHVVGFVSLASVDKSTLYSKHARMAVAYQLVLVHCGLTTVSSSVFVTKRRTTESKCCTGGTRNPPGSTGTEGSLPISVACADFGHTYVYGL
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