Scaffold Ga0209846_1000172

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209846_1000172

Scaffold Ga0209846_1000172

Overview

Basic Information
Taxon OID	3300027277 Open in IMG/M
Scaffold ID	Ga0209846_1000172 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9637
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location Name	USA: Columbia River, Washington
Coordinates	Lat. (^o)	46.372	Long. (^o)	-119.272	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009456	Metagenome	317	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209846_100017214	F009456	AGGAGG	VNINLHLTNTTELRAEGYIAGDQLFAEVRWGFPDPTTRRGDGSLWGTPQAMRRLAELAVQAAVQAEEEAAWHARGARAAAEQGSRVA

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