NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209691_1000364

Scaffold Ga0209691_1000364


Overview

Basic Information
Taxon OID3300027279 Open in IMG/M
Scaffold IDGa0209691_1000364 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32272
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (84.78%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F005302Metagenome / Metatranscriptome405Y
F006252Metagenome / Metatranscriptome377Y
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F012577Metagenome / Metatranscriptome279Y
F016100Metagenome / Metatranscriptome249Y
F032180Metagenome / Metatranscriptome180Y
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209691_100036415F016100AGGAGGMVKSVKVERFKEYSELVRVVSRSEKTPATNKDIIRPLNYELFIGSHLPEPDWHRLGALVVALFRSFAVVDVEIWQADNGDWIADALVDFGDRRRLRRGEGDAPLQAMIELITDIQRY
Ga0209691_100036418F006252GAGMKSFDEQAAFGLPYEHIIAQTAALLLYPQRLDLTLVRLDAYAPLDYLLLDGDCPIAALEVKRRSIRSDTYRTTIIPQSVVDAAKRLTIPVYAAILFTDGLAVFDVLRTPSGVRWLRTRRGRLRKHREYDISERLVKVEEVHQRQRRSA
Ga0209691_10003642F002970GGAGMSSSSVIDIIELLAGLAVQYNSAVVPVRRLATQPNWSDAAQLPVRIIPTLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVAQLRFAWLARGDVQLVNVSGIVDVVRYGERAYEGVVMTTRFAHLIRAPSV
Ga0209691_100036421F004307AGGAMFKELINRNGNGRERPELNGAYVGRFLGVKERQRPTFETRNAPEPVMEDVFVFEFDIEDDDGQPVRVSKWVRKPARLTHPGKSGKVTNLYRVLSALYGVAQMTDAQLERAEEFIQEAVGREYQLTLETKPSGWVEIVHIAPVRARLRKTKEDEVPF
Ga0209691_100036424F005028AGGAGMRDDDLRAAMSFFAERLRGAELDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTYIRYFLRYHVPALNESAAVGETYTDPDAAAEAHLGLCWRLDEDVLTVYSDLHRAAKRLRQPYRDLAAVCLRWGYVHETVVQLLAKTLERKAKDVVED
Ga0209691_100036425F032180AGGAMWWKIEEVPHQELEEWASAVYSCERRAKRDPATRAAGAFVIYSLPDGALGYVAGREAPDGAYLVERWVRGKRGWTLYE
Ga0209691_10003643F005302AGGAGGMSHSGVLAGLYAGNFAVEISTDATTWTAVSNATVKVDDVELNRPSGEAYVGGSSDHATITVGKREPVELTLTFLYNEDTGSAANTIVDRFQSATPTLGVRWSPRGLVGSARAYGTSNDGGTSFGVGVITNVTLSALDPSDADPYVAMVTVRTPSLRQYTLGSSPTNLNPAS
Ga0209691_100036433F075805AGGAGGMWVKVWHGWRGVHNGVDVSKWNWVEFDGELLGSLVVEIDEDRTDERVFYRLYDGRIVVAEHRYGDWEKGGVDYGVVSVYADLDDAARRGWRDDLVRIGAYDAPTLELDEWLSRYEEEE
Ga0209691_100036434F002982AGGAGGMKIAFERTPTAICAVLTEPGECDRIITVARASDAIDVFALDVSPAAYKPLDTLFALPRVVCVEIERREGGWRVEVAYWNKGLGTPAQYETDAASLAEALARCVWALAR
Ga0209691_100036436F007976AGGAMPSTELSNFLRVALDVQAPPFSGIHVADGVAAATDGVMLVAKKFDVVFLRGEGAISPKAAKVLEALAEGTWIGSIAVVGNRVTATAQTTRYDEQLGAEVAGGYREIELEFYCPRAPVARMLGVLHDESRGWQQIVENPNLKALKEMSARDYVALIDNPRNGGELFRPKEIDDPHWYSVAQLRKGLRLFGKNSRLSVRRNAKGWLAFGDRWGYTFAVTPFVKHN
Ga0209691_100036438F006418AGGAGMPKRRSAPKPQPAREVVIAEGADYRLLYDRETRDYAVEFKGAPVGWRPTEAEARRLVEQLRYEDARGE
Ga0209691_100036440F010840AGGAGGMNLPFSQPLDKITYGALAAATVVILSWALREFAGIDLPAEVQSALALLVGFGISYYVPLSEVEAEAIARKYYKYK
Ga0209691_10003648F012577AGGAGGMLVAIAEPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWHALGFGALQREARISVVQNVFTTTKWKPVSSGFMPNSGYNSRPDLWEYEFIPGNLFISIRIVTKRTFTISNSTLFFVAYLYAQPERYATITSNERLYVGVTTTGLATGVWVAPVTAIPQPNTYTLTLGAFSSINNEGVITASTCYGWIVGVRASGNETTVGATSVAFLARINDPGAGGINAELLSTALIARGGCCDIYLPSQTIVDIENPNANLREIIEHVRTDYSSVRYHLKRFLRDRPRPVIDLRSDSTLVWRFPETTRVIDISKAPSRVFAQYRGYWTDHLTATTTIQSLESRRRLARRVAGVGEYGSKTTADARRDEAAIALDRQIAPITVELDNSRYELITREGVTVPNWAADVSDYAIVPGYYRNAKITSRTITRERTTYTVSFTPDDFVTVLR
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