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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027279 Open in IMG/M |
| Scaffold ID | Ga0209691_1003919 Open in IMG/M |
| Source Dataset Name | Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6657 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming: Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.963 | Long. (o) | -110.715 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005631 | Metagenome / Metatranscriptome | 394 | N |
| F006418 | Metagenome / Metatranscriptome | 373 | Y |
| F007976 | Metagenome / Metatranscriptome | 341 | Y |
| F010840 | Metagenome / Metatranscriptome | 298 | Y |
| F043176 | Metagenome / Metatranscriptome | 156 | Y |
| F051735 | Metagenome / Metatranscriptome | 143 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209691_100391910 | F005631 | GGAG | MRVSVSVDLDNALRKLLPRAARIEAALDAGAAAAHSVMQVYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHRGRWASLRDAAEAAKKEAIAVLKERGR |
| Ga0209691_10039192 | F007976 | AGGA | MPSSELAHFLRTAIDIQATPFVGVHVADGVAAATDGVMLVAKKFDVVFLRGEGAISPKAAKVLEALAEGTWIGSIAVVGNRVTATARSTRYEENVGEVAGEYCEVKLPEFYCPRVPIARMLAALTDESRDWQQIVENPNLKALKEMSARDYVALIDNPRNGGELFRPKTDNDAQWYSVAQLRRGLRLFGARARLSVRRNARGWLAFEDGYGHTFAVTPFVKHN |
| Ga0209691_10039193 | F043176 | AGGAG | MLQTYKIWEGERTFLPGDDTNKYKVFEITGEELGWFEDVIDGKTYYVYQTSEGEVVINIVEQSYGIGEPSRAVIFRFLSLEEAAQSEQRYALEELRLI |
| Ga0209691_10039194 | F006418 | AGGAG | MPKRRSTPAPRPAREIVIDSGDDFKIIFDRETRDYAVEYRGQPVGWRAFVEDARRLVEALRHEDERRGE |
| Ga0209691_10039195 | F051735 | AGGAG | MYQDVTIINGPVPKDGVADYERVRIKARPLGRPYTWDNGRAWNDYTTNGGVAIVFEAKDGSIYIQEIEWEVDPYPDATPDPRTYYYYEVYNSLDEARAGWRGWLIEYALGNE |
| Ga0209691_10039196 | F010840 | N/A | MNLPFSQPLDKITYGALAAATVVILAWALREFAGIDLPAEVQSALAVIFGYVVSYYIPLNETEAEAIARKYYKYK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |