NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209691_1004081

Scaffold Ga0209691_1004081


Overview

Basic Information
Taxon OID3300027279 Open in IMG/M
Scaffold IDGa0209691_1004081 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6425
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007976Metagenome / Metatranscriptome341Y
F031016Metagenome / Metatranscriptome183Y
F044842Metagenome / Metatranscriptome153Y
F048124Metagenome / Metatranscriptome148Y
F051735Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0209691_10040811F051735AGGAGMYQDVTIINGPVPKDGVADYERVRIKARPLGRPYAWDNGRAWNPYTTNGGFLLVFECEDGTIYVQEIEWEVDPYPDATPDPRTYYYYEVYNSLDEARAGWRGWLIEYALGNE
Ga0209691_100408110F044842AGGAGMEEIELWGGIRGNTFRSTHLVRFTGEYLGVVTVEHADEWVERCVLYRTEDGRVAVHQMRLSLLDDGVDVAEVYVLPAPDAGEGERGERL
Ga0209691_10040814F007976AGGAMPSNELAHFLNVALDIQATPFVGVHVADGVAAATDGVMLVVKKYNDPVYLRGRGSLSPKAAKVLAALAEATWIGSIEVNGNRVTVTAQSTWYDEKVGAEVAGEYCEVKLPEFYCPRVPIVRMLAALTDESRGWQQIVENPRIKNVKEWSVKEFVALMNNPREGHELFRLKDTDDTHWYSVAQLRKGLRLFGKNSRLSVRRNAKGWLAFGDQWGHTFAVTPFVKHN
Ga0209691_10040816F031016AGGAGGMTTITIWKGSRRVVLGDDIEFVEHETFIGEELGAVWEEENSRGTQTVFYHTEGGKIVVHQVLWSRWENEATYAYIHVFPSLDGVNGAAAMFWRELEQAGLIPPRTVGLDE
Ga0209691_10040817F048124AGGAGGMATISIWRGYRHWNWDEENDYETVTYEDAEEIGAVRFEDEEADIQYRIIQWDEGIVVFYVKREGHYCEAEIFEYPDLEAAAKDYAFILRKAGVIQ
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