NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209691_1004740

Scaffold Ga0209691_1004740


Overview

Basic Information
Taxon OID3300027279 Open in IMG/M
Scaffold IDGa0209691_1004740 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5719
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F007172Metagenome / Metatranscriptome356Y
F012676Metagenome / Metatranscriptome278Y
F054900Metagenome / Metatranscriptome139Y
F066811Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0209691_100474010F002372AGGAGMPTRREDALWQIVHRKSSHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDAPPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVQEYRSDPSLGGAEAWA
Ga0209691_10047402F066811AGGAGGMEFNNQPQFNAPNMTDILNAATSIFNPFVGVLALAIGVTLGARMLGRIVNLF
Ga0209691_10047404F054900AGGAMISRGCANIGAMEYERAVVQLLVYGVTLIMLYVVDRWSRG
Ga0209691_10047406F007172AGGAGGMNTPERRTFAAALRAAKRDTYCRQVGGFVIARMTDGTIDWFPLGQPPHRGGEPDKGAVILGRWRWNYRRWSRIG
Ga0209691_10047407F012676AGGAGGMSTTIKIAAGWDGNPKSLTSPEHNWIRFLEAQGIAYPAYLDEPAGWRLVVCDERRLTRALHALRKYGVYGICEWTYDIH
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