Scaffold Ga0209691

Basic Information
Taxon OID	3300027279 Open in IMG/M
Scaffold ID	Ga0209691_1006925 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209691_1006925 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4207
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4207

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033055	Metagenome / Metatranscriptome	178	Y
F050402	Metagenome / Metatranscriptome	145	Y
F092114	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209691_10069252	F050402	N/A	MFSQLPTTRKGAIAERYVRDVLVSSGWHIYTYSADQSHPVDMLAITSDGGLVAVEVKCKCARIYYPDTGIDRNDYYAYHELQNQLNLPVLLLFVDSYTKTVYGNYLDYLSQPLTIIDNQRELVYPMIVERYVYFALQSMEHYADIPPAIVAQLNTRTHSKYHHPLPTTHDVDCDGV
Ga0209691_10069254	F033055	GGA	MMMVYPNQVITNLNWTDNTNQDILLALAEGDGMYIYNTEPENLLHLGMPQEVVNCEVGVRGTGSFFNPPLLLNFYRAGTLIGSVSVPTTNNWETHTLTVDRWDSVELLVGIGGTVAVDFIRAEPFGGLPTRRTLTGVGI
Ga0209691_10069256	F092114	N/A	MRELLSITRHKMEQLLGDNPPKRDTWLIKCRRLREIVSNLPSNQIITTSIPEGHSNLLLINITIKAHAMMQLLRGTVVDFGDDTELYQTEFNKFLAANELALREAILQRLVYGLGAVCVVGDKQHGWRLQSISPTDLWWDCTTGDVMQPKWIARGYRDNDSNDYREVWYADVYHRYKVGSTDVDTHTNPYGVIPIVLFPAQYIPDTIYPIGDVELACPQQFILDEIRRTYLNMARRGAGFFSVKRSSIDETELQRLQNPDEVYVLVNEQDAIMPIPTPAPNPEWQALETLAKQDMDALMGISEYVRGVLPTGRAKFATEVVAAVAGQTVRIQAEWYNTKVALERLATVYYKLHNPNGTATPRALEDSLTSANQLLRTEMVGNAPSGNIPAQQSV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209691_1006925

Overview

Ecosystem & Geography

Associated Families

Sequences