NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209691_1007499

Scaffold Ga0209691_1007499


Overview

Basic Information
Taxon OID3300027279 Open in IMG/M
Scaffold IDGa0209691_1007499 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3946
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006418Metagenome / Metatranscriptome373Y
F010840Metagenome / Metatranscriptome298Y
F043176Metagenome / Metatranscriptome156Y
F051735Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0209691_10074992F043176AGGAGMLQTYKIWEGERTFLPGDDTGKFTIVEITGEELGWFEDVIDGKTYYVYQTSEGEVVINIVEQSYGIGEPSRAVIFRFRSLEEAAQSEQRYALEELRLI
Ga0209691_10074993F006418AGGAGMPKRRSSPAPRPAREIVIEEGSDYRILFDRESKDYAVEYRGQPVGWRAYVEDARWLVEQLRYEDARRGE
Ga0209691_10074994F051735AGGAGGMFRDVTIINGPVPKDGVADYERLRVKARPLGRPYVWDNGRAWNSYVTNGGFVLVFECEDGTIYVQEIEWEVDPYPDATPDPRTYYYYEVYNSLAEARAGGRGWLIEYALGTE
Ga0209691_10074995F010840AGGAGGVNLPFSQPLDKVTYGALAAATVVILAWALREFAGIDLPAEVQSALALLVGFGISYYVPLSEVEAEAIARKYYKYK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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