NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209691_1013588

Scaffold Ga0209691_1013588


Overview

Basic Information
Taxon OID3300027279 Open in IMG/M
Scaffold IDGa0209691_1013588 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2331
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F053114Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0209691_10135882F004024AGGAGGMHSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPVIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0209691_10135883F002978GAGGVSVCDWRVTLKPWADRRLWFVQARCGGRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSALPASLPGTPPGAPGTSGA
Ga0209691_10135884F000642N/AMQEIGIALALCAVAAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLPASYGDAGVVADGVTYPASLPALRAGRELIWIARCDAAALVEHQALERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQALVAQILALVGER
Ga0209691_10135885F001381GAGMQYVVATLYVLLWLALAAGAALVLPRWALPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0209691_10135886F053114N/AMDALLHPAQAMPSSPALRFIVDWLGDIADYTRLMYMLVDYVAYASVVQQALAAQLTIVTIGLAFRAWLVIRRVVLVS
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