NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209691_1014572

Scaffold Ga0209691_1014572


Overview

Basic Information
Taxon OID3300027279 Open in IMG/M
Scaffold IDGa0209691_1014572 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2200
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029920Metagenome187Y
F061873Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209691_10145723F061873AGGAGMNEKNETMTLDDLIQRGVAIREKRIAEERARITAFYEKLARESAEREREIRALLPPPLNELSRVDVGVRHVHIYITEPFPGKGKVVIYASKKDEQWRFLEHEAYNPDGYYLKFQTLEEAVAFASGALEV
Ga0209691_10145725F029920N/AMISAQALELAFREERQLKGFIAPGLALSYQPREYLAIGRADRQPDADDIALVITLAREAFIIIACEPQRKVVASNGVTWYLARWPLQRESVADHL
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