NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209691_1016312

Scaffold Ga0209691_1016312


Overview

Basic Information
Taxon OID3300027279 Open in IMG/M
Scaffold IDGa0209691_1016312 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1990
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033055Metagenome / Metatranscriptome178Y
F050402Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0209691_10163123F033055GGAGGMVYPNQVISNENWTDNPPGIGILLALAEDGTMYVYNTAPNNLLHLGMPSEVVNCEVGVRATSSGSSGGEDDFPPIDIYPPLILNFYRAGNPIDSVSIPTTNNWVTHTLTVDRWDSVELIAGLGGTVAVDFLRAEPYGGAPTKRTLTGVGI
Ga0209691_10163125F050402N/AGTIAERFVRDVLISKGWHIYTYAAEQSHPVDMIAITDNGRLIAVEVKCKSARIYYPDTGIDLNDYYAYHDFQSQHNLPVLLLFVDNNSQSVYGNYLDHLSQPITIVYNNRELTYPLIQNRQVYFALQTMQHYAYVPSDIVAELNSHTASNYYNPSASKEV
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