NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209691_1017028

Scaffold Ga0209691_1017028


Overview

Basic Information
Taxon OID3300027279 Open in IMG/M
Scaffold IDGa0209691_1017028 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1918
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002978Metagenome / Metatranscriptome516Y
F011940Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0209691_10170281F002978GAGMSVRDWRVMLVPWADRRLWFVQARRGRRVVWGVVYDAADPESVALARRAIATLRSAGADCSALPASLPGTPPGAPGAPGA
Ga0209691_10170282F000642GAGGLQEIGVALALCAVGAAVWYMRRREAGAGRVRGWLLLYDAVGGWRALPASYGDAGIVADGVTYPASLPALRAGRELIWIARCESAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVAGLQALVAQILALVGER
Ga0209691_10170284F000855GAGGMDWLEDFWSKVVGWWDHASANIYNGIVSFVNVLVDIWNRWMDALLHPAQAMPSVPALRWIVDWLSDLVDYTRLMYMLVDYVAYASVVQQALAAQLTIVTIGLAFRAWLVIRRIVLVS
Ga0209691_10170285F011940N/ALTLTPSPTWTALPSATRDPYQPPSAVPRYTLAPVTPPPLGDDVSWDGSLVGDLLDGLEALGRAVAPPASRICDLPAPVLADAPEYGFRDAFPDFILGLCGFLGVASPVLNFVRLPVTLMVVGFVFWTAWRVFRSLS
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