NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209691_1018432

Scaffold Ga0209691_1018432


Overview

Basic Information
Taxon OID3300027279 Open in IMG/M
Scaffold IDGa0209691_1018432 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1790
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020180Metagenome / Metatranscriptome225Y
F026891Metagenome / Metatranscriptome196Y
F040649Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0209691_10184323F040649AGGAGGMRKLNIDNPAKLFAQLSAITDACDPNEYAPLEYYLQGGEIELPGGSPATGDWLLAIKAVELADDLVQYAEGNGALRRSFRLIYLAPLETYFWGEYRWRDPVGFTILVRWHRIPKTFNAQLDQIRQRSRRHSDA
Ga0209691_10184324F026891GGAGGMTIIAGDVVKIDTDREDGRVWWAQNGAKRTRLALYAAQGVHIERVDTEVYLARDAVPVWTGEEWHREAAVYLYPTEKDELYAVWLNTRCGFGVTPKDAVLWEASSFGGPKNSESKIAVLKTGCYVEEYTYKRATPFNWYAIALDGAVRRLGARSNIVALALRGDKDAEHLAEFKGWLSELTGELEVQDEL
Ga0209691_10184325F020180GGAGGMSYDAKRWYITRCSCAKPILYQERDCYPLRCARCGGHVYTEPRPPHFERLRPTPIVDFRAVLRVLGLCALGLLGY
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