Scaffold Ga0255131_1003988

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255131_1003988

Scaffold Ga0255131_1003988

Overview

Basic Information
Taxon OID	3300027285 Open in IMG/M
Scaffold ID	Ga0255131_1003988 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepC_8d
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3932
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	45.0061	Long. (^o)	-74.7949	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031456	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255131_10039889	F031456	N/A	PASASAVFNLDFLPEKFLVVATGASQALSNFSVVTAGVQLMSITALARINALARFDSGTILDGAAPANQQAAAYLRLATGRINKGTTITGTNSVAAVRNVFAASTNISNVARRAVEQSINPSANATFDSFEALLFDPANLLRAQITFANGYTDEYTPQELQALYANYHVAEADGNVNGLTIIDADSGAGLISQVTLFAGAGAAIVVLKTDYVQL

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