NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255134_1031249

Scaffold Ga0255134_1031249


Overview

Basic Information
Taxon OID3300027292 Open in IMG/M
Scaffold IDGa0255134_1031249 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)895
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034568Metagenome174Y
F041003Metagenome160N
F082589Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0255134_10312491F034568N/ADGWRTFAYVRDGTPMGLMPITWANELFKTKQQAKKFIDDLATKNGWKK
Ga0255134_10312492F041003GGAMKAWTPPTDYLDPPKPPRHYKYVWLRFDIKTKKFKYPLVRHKQLKNRKRFPFIYIKHYGKCVGIEGLTLAKVKI
Ga0255134_10312493F082589GGALVSLLKNQQKGNVMQNDKVYEVASDLYFYFIDLYGAREQCVIENDDYSENTELGTELYYQIEDELINNVQPTKN
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