Scaffold Ga0209389_1066670

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209389_1066670

Scaffold Ga0209389_1066670

Overview

Basic Information
Taxon OID	3300027296 Open in IMG/M
Scaffold ID	Ga0209389_1066670 Open in IMG/M
Source Dataset Name	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2078
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location Name	California, USA
Coordinates	Lat. (^o)	34.0722	Long. (^o)	-118.4441	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008539	Metagenome	331	Y
F076938	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209389_10666701	F008539	GAG	LSGSRIHAFNQRSFIPLCVSTLRLIFHSWKCDVYQFSFHLLLCFHFLVSNNFSNFLLVSIPTMIDQSNESNLVDSHHLVFRAWLSRFGIGKEVYYTKCLTKGHPCLAAFDYRSENNVVSQRLVEKLQLPATFHLDQAWIKFSTWQCVKEVLCD
Ga0209389_10666702	F076938	N/A	MILXRTSSFSQVETYSLLPGSNSTXYLLLSNGCNPSITFLGNSTPPXYVTINNSIHCVXRICFLSTDQMHNKALXTSFLFKHGSWCVSFTCLSYCSCKMTSQTVEEETLTNKLSLVPFLFSLFSLPSAVYITSFSLLSFSIFSFSLRXSLMTCLGVINFYFFXCPSCLK

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