Scaffold Ga0208241_1002307

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208241_1002307

Scaffold Ga0208241_1002307

Overview

Basic Information
Taxon OID	3300027297 Open in IMG/M
Scaffold ID	Ga0208241_1002307 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2272
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location Name	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.550409	Long. (^o)	-72.180244	Alt. (m)		Depth (m)	0 to .1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001497	Metagenome / Metatranscriptome	683	Y
F055935	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208241_10023071	F055935	GAGG	MGALFILCGILVGLAVYRSGEARARWQSLKASRTTARNQRNTAWRHAGSAALYVVGAIFFLFIVLKLLK
Ga0208241_10023073	F001497	GAGG	MWTYSDGARTVKGYRRPGGTAGAGSWVLVDQGTGNVQGVVPAGEFSRRFRPVDVFADVPELATYLGTVTAPGGTALVDLVLDRNPFMLANGPRRAARPHALVVPRRHRDGWSSATAAELAARQTAMTLVAAWYRSLDGGHVVFCANDSAPNLDYLRDTEAASGILAGSGPDAAITKNPRQDVQHAHLHAFYAEHDRTENHESSALAGHPVIA

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