NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255096_1005812

Scaffold Ga0255096_1005812


Overview

Basic Information
Taxon OID3300027302 Open in IMG/M
Scaffold IDGa0255096_1005812 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3412
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F008184Metagenome / Metatranscriptome337Y

Sequences

Protein IDFamilyRBSSequence
Ga0255096_10058121F008184N/AMSYTDLFNEAIDDVTATLTAVTGLRVINDATKLVPNSVYLDAPNFTTFAGNGNIVRLEFPVKVIGSGPAGLPVLRSILS
Ga0255096_10058122F001326GGAGMATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVAGVDATFNGTYTVRALPQYLFLGIDTQGDLLYDYQVPIADQVLYAKTASDVERVAASGTVANDPVCTWVTAAQVMSYLGITITNPSDDYTLLTQSVSAGNQFCFRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA
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