NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208810_1045291

Scaffold Ga0208810_1045291


Overview

Basic Information
Taxon OID3300027304 Open in IMG/M
Scaffold IDGa0208810_1045291 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1560A-02 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)979
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2638Long. (o)-123.4649Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001125Metagenome / Metatranscriptome769Y
F082676Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0208810_10452911F001125N/AQRRNKMGDRANFGFKQSDGNTIFLYGHWAGHEMLANLASAVSAAEPRWQDESYATRIAISNLIGDDWAHTTGWGLSVGRILDNEHKIPVINWTAKTFTLYEEDLSTVVFSLSLQDFCTKYSRLVMV
Ga0208810_10452912F082676AGGAMPNWVYNTLTIQGPKSEIDFIKDKLNQPFKVLHDSWNIKTNEMEVSESIYSAPVFAFWNIHSPLEDGITMEEYVQQPTRLGTDTSAPDWF
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