NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208923_1013334

Scaffold Ga0208923_1013334


Overview

Basic Information
Taxon OID3300027320 Open in IMG/M
Scaffold IDGa0208923_1013334 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1441
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001125Metagenome / Metatranscriptome769Y

Sequences

Protein IDFamilyRBSSequence
Ga0208923_10133341F001125AGGCGGMGDRANFGFRDSKENIIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICVSQLVNEEWASETGWGLNVNEIGDNEHKVPVIDWKNKTFTLYEHDLHSPVF
Ga0208923_10133345F000980N/ADLTCPCNSKCTLLSVEDATIPYTDTPLTKEEPMETETPAVIVPDTYNANLLVTYKVIHGYSDATYDTDKVASIEWSLHNGRQSQKQVTTLLSKINTVKDIITEAYEDSDDKETLRAIAEALDIELVREVQFTASVEVSGTYSFNILESDYDFDLESEVTDALYADSNNGNIQIDDTEVCNVRES
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