NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209186_1001714

Scaffold Ga0209186_1001714


Overview

Basic Information
Taxon OID3300027325 Open in IMG/M
Scaffold IDGa0209186_1001714 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15980
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038959Metagenome164Y
F040447Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0209186_10017143F038959GGAVAAYGPPATVLSDNGPQFRSTFFQGVCSQLWIANRYSTTYPSQTNGQVDRYNRNIVGQLQTYVEDHQNRWDDLVSMLTLAYNSRPQQSPGVAPLEFVTPERVRGLSEERMVGSPAPEDTDGSPRVIREAIRARLRNLIHKVRRSLSVAQRRNKRSYDARVRPVNKQIQAGDWVFVDGHARTKHKLETRAAGPHKVLSRGEGTFSLDTGGYPETVSSDHVTAAPNLPGDPQKLIQSLGVPQDVLEPEGQQHTGKEFVWEAFVGHEVADDGMLRLRTRWWGYHPDEDTLELASRLDLRKVHRYMRRVGLRVEEEVAVVDFLA
Ga0209186_10017148F040447N/AVTTEDGDDRVGTRAGYDKLAVLECPDDRFAGVLDYGSYRRRSRHLTHGASQARKMGRTAKNMKFSFGGTPMFNGKEPLKVFSWLRKFVKACDDNDVSEGMGLYLFPNFLGGDAETRFTRNLPGSDVGGGRGALGTCPTAVNWLLSSDAEPHALGLAQDKFSRATLGDKKGVDAFAARLRSLAELCGNIHSEGTMKQQLIQGLPEYLRTDAFVYNTSQRSYQQLSTYVAGKYRAAKDVMALANRGSSGGSPRKGQTSTGPRGLSVNHLESPWDEDDAAPHERVAVLPSGTPGFRTVGASPYSQREAPTGPPLCYMCWTRGHRAPDCKILTEKERDVVRAARNNFMRQRKRGADPAQDRTSVVALLWGDLLGGAEATRTDGRDAQPVETPAKGRRGAGHA
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