NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209186_1002329

Scaffold Ga0209186_1002329


Overview

Basic Information
Taxon OID3300027325 Open in IMG/M
Scaffold IDGa0209186_1002329 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13574
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Rhodophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052353Metagenome142Y
F061493Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209186_10023291F061493GGAMPVRIQSRPKGIRPRDAPLPRGNDGQNVVAILTGSNYQVASRIWLDAGRELALRVIVDTGSGILLVLEARIPPEMKVAPLDAANTQLFDVNGRLLPITGTMIFMVRVGTHMRPVTCGVVRGLSVPLLLRTDYADVQVPNVCGPECGGWDPWEADWPGRRCTWLADRL
Ga0209186_100232910F052353N/AMSRVPLGGLPGATTPTGERRKVTRILSLAHRHYDITATIGPCQRKMHSCRPVLDTGAGINLVRHNVLPANWQSYAGKLERTPRIKDANNNRLIENYAIHLYIDVGCAKVFDRFFVAEHLSVPCILGIEFMDNHVEAIFTHLKKVVWQGHVGDVTRNLR
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