NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209186_1004815

Scaffold Ga0209186_1004815


Overview

Basic Information
Taxon OID3300027325 Open in IMG/M
Scaffold IDGa0209186_1004815 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8847
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039926Metagenome162Y
F045507Metagenome152Y
F061493Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209186_10048152F045507GGAGGMGGIKIDKLTEKNFHEWRQRIEVVLALRDLDDMLDEDGKPTDAEDRELAL
Ga0209186_10048153F039926GGAVTLMVPHMVHLQDVVKLHTFVLGHLGALLLSCFGFDRRFALVAFDLVSDSIWCEGVGVGVGARGGSTWAGGDSLRGALGWERRANLRTSNKARSHTHTQAQATQPLHRGPPTPIPTAFQQGMGPEPGL
Ga0209186_10048158F061493GGAMPVRILFRPKGIRPRDAPLPKRVGGQNVVAILTGSNYQVASRVWLDAKRELAFRVIVDTRSCVSLVGEALLPPEMEVAPLDAATAQLFDVNGGLLPITGTVTLTVRVGAYSTPVTCGVVRGMSVPLLLGTNWTDVHVPNICGPKGYIR
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