NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209186_1015856

Scaffold Ga0209186_1015856


Overview

Basic Information
Taxon OID3300027325 Open in IMG/M
Scaffold IDGa0209186_1015856 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3807
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026183Metagenome198Y
F029971Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0209186_10158562F026183GGAVLTRGEGTFSLDICGYPETVSSDHVTAAPGPPADPQTLLQNLGVPQDVVVPEGHQHTGKEFVWEAFVGHEVADDGTLRLWTRWRGHHPEGDTLEMSSRFDLRKVHQYMRRVGLRVKEAGSVVDFLA
Ga0209186_10158563F029971N/AVGSSLGNHIVSFDPVEHRDIPDAAFAQLDHVPWDRVPQGSARVVACDPGELRSYTTGTLMAGLCHTMVSPGDSVAHWARDNHGVPPHQVEELLQLVGRRNARAVLLRETSVAAGGVRHRQQHQRDRDVYQDDPTAQRPRGPPTHGDGGPMSGRR
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