NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209731_1001638

Scaffold Ga0209731_1001638


Overview

Basic Information
Taxon OID3300027326 Open in IMG/M
Scaffold IDGa0209731_1001638 Open in IMG/M
Source Dataset NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2457
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086452Metagenome110N
F096165Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209731_10016381F086452N/AVWLIPQSPFFRKCCSFTAIFLTFIFLAIRAVAAEANSLEDAARLLADRVVSIPNLHGPLRLEFTEGGGLAASPGKAWLRSFRRELEARHFDVTEDSSAPVLRIAVTATPTQLILAVSARSLDHDEVRFVSLPRALIRPANLPVAPLRIERQLVFESPELILDASSLSNGSEGGIELLAYRKGELTALQLDAASAVKQSIPLTAAALHPSRDPHGELCARGNEVDVLLPGKVCTFIWAPGSEVKCQSAKPVWRGTAFVTPSCDPGGWKIVSDGRDWTAPE
Ga0209731_10016382F096165GAGGLQRVTRGVLLIFAISTITTARYSFAQGAEEKPTACDALRSQKAKIYGFHLAQLNETQMAEKGQEINAFWKEVQADGPEGTTCVRGMLEQEKSDHNFQFDAASMLYQADHSPATLTLVRDSIAQADFAESDPANYLSLALELGQAGVDIRVLAAKFLSYPDAVVHVPENALDLDSDTAALFLYGSMDPSLASKALIEQLQATEPYVRAAAAHLLAEQMTEEGFRTLSKWDGWSKIEEDFRRNDIQAVMKYKAANPDDFAHPKWTREQVLHLIAGLPHTRKEFDDVIATKGAAFDQQIREKKPSQEELSKIISESEPIYGIAERTSFMTSAVATLKAEDFETLREARRKSLVNVSDESLSEYLAFTQVMIGLLNRLDLYKDYRSH
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.