NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255138_1004396

Scaffold Ga0255138_1004396


Overview

Basic Information
Taxon OID3300027333 Open in IMG/M
Scaffold IDGa0255138_1004396 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3076
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F012669Metagenome / Metatranscriptome278Y
F025652Metagenome200N

Sequences

Protein IDFamilyRBSSequence
Ga0255138_10043963F012669N/AMSEQTYMKLKDAVKLKRPELDVKKINRENKHFKHLVDSYMNWNQPRGPYDYDEPRSTYEDDIIECIGYYNWDGFALAQHLSEYKYIEPDSDLVHILEDVISVKSSLEIEIEIQWVKENFLTISDDVIGKKVNVKQGIRKYENHYITGIKTETYQVTVSDKIDKNGGYIVGFENVTFL
Ga0255138_10043964F000962N/AMIGFLKSDMNIHVPDEIKAKYPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS
Ga0255138_10043966F025652N/AELSCHSTEIVFEFMNNKTYFYRVAHKKYSWNGRYPMGPYAFFNESRFLLNIQKVPFSGCAYEKFVEFTSKEIVEYKKFNINNFNLKWVPTLPNAWRPGPFEDIDLREKMILRMGTMTKNGKFHLYGFDSLMQASKWYNNQEELQFLEDNEFRMYKFKVKSKNMIVGKTQSVCFPDINDDMDMLWISSIKLTDLNKSVNINSTTQTINKLFV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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