NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255138_1030023

Scaffold Ga0255138_1030023


Overview

Basic Information
Taxon OID3300027333 Open in IMG/M
Scaffold IDGa0255138_1030023 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)978
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009333Metagenome / Metatranscriptome319Y
F053303Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0255138_10300232F053303N/AMANLKISIGGTIYQINEKAFRKLGWNKEPITPYFYVSYAAAGQLVKQWVKNNYPNVVCRVKGDSFAGGNSMHVNVCNPDGTPIGQADYEAINNFAHLFEYGRYDGMHDLYESYESSGLKTDNGTKLDAGVKYVGVDNRPSFGTVEWARAEMNAGREYKDLSRYCDTKILDKALAA
Ga0255138_10300233F009333N/AMSYVRFNRHQIFDREMMGYHFETLRAVEDFYMEQDASWFNEVYNMLCGVWDGYLYTDLLESAKQLGLPTHITNRIEYTINFIQK
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