NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255130_1035314

Scaffold Ga0255130_1035314


Overview

Basic Information
Taxon OID3300027335 Open in IMG/M
Scaffold IDGa0255130_1035314 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepB_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)933
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017485Metagenome240Y
F027416Metagenome194N

Sequences

Protein IDFamilyRBSSequence
Ga0255130_10353142F017485N/AMNNELKTKDILEGITFILMIVATIGMYCLLYEVKELRELTKGATNFRTIRK
Ga0255130_10353143F027416GGAMLTIENIQKLKGCKVGANGMVWKILRTKEFDYNSENIYSIVLTTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIMRVVERQDMVDVYNFLRLIKKEIERAVR

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