Scaffold Ga0209589_1051453

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209589_1051453

Scaffold Ga0209589_1051453

Overview

Basic Information
Taxon OID	3300027357 Open in IMG/M
Scaffold ID	Ga0209589_1051453 Open in IMG/M
Source Dataset Name	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	980
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location Name	California, USA
Coordinates	Lat. (^o)	34.0722	Long. (^o)	-118.4441	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018869	Metagenome	232	Y
F028433	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209589_10514531	F028433	N/A	FSIIFIFSSFSFSSISIPSTVYICSFSILSFSIFSFSLCXSLLGCLGVINFDFISCPPSLKYREPLLRLSVLKXSHANLKRGXQEFVGAISDNTSCTHCPVLNLIFPXFEXKLIGNLSFSTNLWLTTVLSLS
Ga0209589_10514533	F018869	N/A	NINCGRNGNXRKRKGRKDKDDGKGSRETRCLIKGHPCLVAFVYVSDNTVGSQRLVEKLKLPTSIHSNQARIKFSTRQCVQEVLCDIAPTNSCHLLLRLAWLHFKTLNLNKGSLYLRDGGHEMKLKFMTPRQPNKDQHRLKEKIEKERIEKEEI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.