NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209300_1000200

Scaffold Ga0209300_1000200


Overview

Basic Information
Taxon OID3300027365 Open in IMG/M
Scaffold IDGa0209300_1000200 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36585
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (82.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002130Metagenome / Metatranscriptome591Y
F022398Metagenome214Y
F070855Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209300_100020010F022398AGGAVTTVNTGKHVTRALEALEEFGRMTAQEFADWADISRYDAHAVLIRMNQRTKAGDKRIHIADWSYEHDGARRYPRPVFCLGDKTDKTKPKADPGANRRRYDAKRNKTFRMNSVFNMAMPRDRVREMAKIVGQSQLPA
Ga0209300_100020033F002130N/AMSEKPESVLDKVLAYVDSPFKLFAAILMGVIAFAGYFLWQNQEFMRDAYKESKKLPEINTSRTDDASAMLIKKTGAVVVAVFKVNPLFNSRVLYRAYTKDGRDKAIEDIDVGLFSQNSSNNSDVVKLMTNDIPCGEYRYAQSEVGLWYLDKGVVYTCRISVPPDSHRFVGQITVGWTQPPENIEQVKFMLEIASAMLTKRGN
Ga0209300_100020049F070855N/AMKHHKYHQHYQVRAAKLHARAEAALDLLAALVIGIGLAAALFYGWSA
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