Scaffold Ga0209300

Basic Information
Taxon OID	3300027365 Open in IMG/M
Scaffold ID	Ga0209300_1000337 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027365 Open in IMG/M

Scaffold ID

Ga0209300_1000337 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26431
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (84.38%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

26431

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (84.38%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F039641	Metagenome / Metatranscriptome	163	N
F042901	Metagenome / Metatranscriptome	157	Y
F049628	Metagenome / Metatranscriptome	146	N
F059968	Metagenome / Metatranscriptome	133	N
F066786	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_10003371	F066786	N/A	KYKMVVMASTLQICAACESKRSIERAWSLTQRLLEPNPIVMSGSEKQIEWARSIRTTKYEALAHVLDCLRKAYETRQGEWPAIARAISPVVNDVSIWRSYSQAGAIIDRRNINWTTAFRNALSRAGLHIGGLV
Ga0209300_100033711	F033435	AGGA	LRSIFDNIPKLEGRPNLVVDIERFIGTPGSIVFREPKASDLFPRPEVEKMLKIAYPEFPAQMLQILMIMARCYVIQPGDGEINPGRRFAQLARDRSDIYLYVVAEFARAFPIDFAAAVDEVPND
Ga0209300_100033713	F031872	GAGG	MVESLVVDEWIYDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHIDAGQTDTTSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKAIVDRIDTLLNKQSVNSTTPVFFLNRASVSSSVDVSQDGRVDNGIAQIYVATITPEV
Ga0209300_100033717	F006623	AGGTGG	MNLQNYRLEPSATTPGDWIVFGDITDNEGNLLGTFGPDGTSIFTWWVTQDVSFQQQYSNQFAVIMAQEIVTGTAE
Ga0209300_100033718	F001733	GGAGG	MNSISIKRLVVVVIVAFTAAFTSVFGDGVRTSEAKDISELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGTNANSLKVGK
Ga0209300_100033720	F039641	N/A	MIPAAYSTALKNAIQAYSYADRVAIWRTVNQADGIGGVSQHWIQVAEIRGTISNTGDTEGIVGGMIEQSGTWTLTCSPDIEVRADDRIYTSGNPQALSPYYECIGSDYGHTNAVSQTIGLRARTNG
Ga0209300_100033728	F049628	GGA	MKFSEVIQPLMHGKPITRVCFDHDVYIRYSDLFEAFVMHSGSESKTLQGLTLDPESLFADDWMWGDDHPVKDEITWTRTTS
Ga0209300_100033729	F059968	GGAG	MSKNTNIEERKLLMVRIKDLRAAGHNIRRTAEIMDMSEKTLHRWIREENPDRPVKKMDPYISLDEKTATVIKWAELIASGETRSKAAEIVGYPVMMINRWLMSEPSLRIEFQECIGKKQNNWGGRKSFDQILADVRAGRPVWRDGARFKIQLVESALMRYELDGANVWRCKGFATLSGNDVLARDWTVIE
Ga0209300_10003375	F042901	GGA	MARKQSDNKDVTDGPVRVAEKPEGLLWLLKASEHEILERLNQDGALIFIHPALDGIVSFRIEENPQHEQKVVHVWR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209300_1000337

Overview

Ecosystem & Geography

Associated Families

Sequences