NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209300_1000645

Scaffold Ga0209300_1000645


Overview

Basic Information
Taxon OID3300027365 Open in IMG/M
Scaffold IDGa0209300_1000645 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16722
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (22.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021297Metagenome / Metatranscriptome219Y
F082694Metagenome113Y
F085382Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209300_100064513F082694N/AMGTKSARHIVEAAVASHLTAQVELTGVNIYKGDSADTNVLPKAIVLCDSARLPNDFPDGLGNYSCTVRVTLLDSADDVTLTDHRARVAAIAGSMQDLEALQAVFTLQGDAHCYDITPMSEDEGVNERSWASVLVYDILVVVNPEG
Ga0209300_100064515F085382N/AMSLYGSTFNSDFQSILADIGVPATVGANLFLVGLSQPMNTPKFDAGGFTEEKMWTVRFAAATAPWTASDGRVGGQVATIASGVPVTSLAPGKKLTVNGQVLRVKGQSYKQASAVIELTCIDDNQ
Ga0209300_10006456F021297N/AMSDTVTLSQGNTFACTFVWTPGATGPANLLATTLTSTVEDKCGNSYELTITKAGDGLSFTCIYPGSTADWALGLGRWDIKFAFPGGGISRTEVFRVQVIDSVTL
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Institute for Fundamental Biomedical Research
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