Scaffold Ga0209300_1000944

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209300_1000944

Scaffold Ga0209300_1000944

Overview

Basic Information
Taxon OID	3300027365 Open in IMG/M
Scaffold ID	Ga0209300_1000944 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12610
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (26.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)		Depth (m)	2500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055561	Metagenome	138	N
F069854	Metagenome	123	N
F095170	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_100094410	F095170	GGA	MGKVNGSALFVSVGLARIAKSTAYNLSAEMSQLDKTSNESGFFADHISKLGSWSLSSDSLFIQEGYSYGDLYTAYINRERVYLSAGQEDSLTFIGLATIESISQSAPMEQVAAISVSFKGVGGLYPTILPAERFIVDELFEIIIDQDGNFLVYT
Ga0209300_100094411	F069854	GAG	MRNIKKFVRKAYWSALNGTITYKGAPVLCYDTFAPDNANFPYILITNQTQEDDKDNQEYNYITTITLDVVTAGIAPYGRFDADTIADSILQIVCLYPENYLALEVGKIVTAKLVQQTSLSSITDTNIVHREIMTIENWIDG
Ga0209300_10009447	F055561	N/A	MSFAEYQSIAYGYQMRQSKEENLFRTLWVQLNNVNVTKKSDLIRKPDKYWKIPLLDAKPIVIPTEEEKQRAYQIGLQWQNLKFEEEANFDTITKTIK

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