Scaffold Ga0209300_1003096

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209300_1003096

Scaffold Ga0209300_1003096

Overview

Basic Information
Taxon OID	3300027365 Open in IMG/M
Scaffold ID	Ga0209300_1003096 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5908
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)		Depth (m)	2500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013086	Metagenome / Metatranscriptome	274	Y
F020169	Metagenome	225	Y
F101135	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_100309610	F013086	AGG	MTDKELIGYTEREEGFYPLYAPGEGYIVTHAFILCKYCNGAVYHCMGPRSDAVCLTCYEKDPDERSS
Ga0209300_10030963	F020169	GGAG	MTSTVRIPWDRNYDNEYKWNEVCARAIEMFGLPGDKFETHANIHYMDFIFKSNKDALMFAIEHNGIIVPNEDLTVEAVGRYMQ
Ga0209300_10030965	F101135	GGAG	MKDIEIERWCDGWTVKVDGQRFHWDHNDEDMGTEGIKELLTYLGHKVTVEECY

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