Scaffold Ga0209300_1016598

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209300_1016598

Scaffold Ga0209300_1016598

Overview

Basic Information
Taxon OID	3300027365 Open in IMG/M
Scaffold ID	Ga0209300_1016598 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1755
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)		Depth (m)	2500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001125	Metagenome / Metatranscriptome	769	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_10165982	F001125	GGCGG	MGDRANFGFKDRKGDTVFLYGHWAGHRMLENLADAVGAAESRWDDETYATRIAISHLINDEWKSTTGWGISVNQLADNEHKVPVINWAAKTFTLMEEDLQTEVFSLPLAGFVSKYSSQPSMV

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