NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209300_1019834

Scaffold Ga0209300_1019834


Overview

Basic Information
Taxon OID3300027365 Open in IMG/M
Scaffold IDGa0209300_1019834 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1515
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F015330Metagenome / Metatranscriptome255Y
F099270Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209300_10198341F001059AGGAMATYDIAALKEDLPTAKDLAQFVYDKTSIALDLVGKPKEEQYQVAKNALEGKKIPSDYQTDLNPYIDRKELIPVDDKRVLPPRNKELPDEESQVHFFGATNMPHPMDPQSDKKVQINFRKYDNGVITFQVMGPLEQVAIGERINKFGQKQPEKYSWIDPRTEEMVLRRADG
Ga0209300_10198344F099270AGGMSTNFLYAQSPNRKGNVSKHTPGSGGVTAVCGPKHGVSGPTGQQGAPKATGNIASRNQKVMVSTHADYCGTCNNDGYMKNSSYNK
Ga0209300_10198345F015330N/AESPKSKAKSIVNRVTEYGALFNKLNEERLSKGLPPLKTAMEVLIDAMQSEEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV
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