NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209010_1000005

Scaffold Ga0209010_1000005


Overview

Basic Information
Taxon OID3300027370 Open in IMG/M
Scaffold IDGa0209010_1000005 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)237573
Total Scaffold Genes210 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)158 (75.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000151Metagenome / Metatranscriptome1897Y
F004611Metagenome / Metatranscriptome431Y
F014290Metagenome / Metatranscriptome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0209010_100000523F014290AGGAGMKNPFDVLRMKEQEIQRVKQEIEALRITAKLLGEEPPSSGEGKVEYRQVVNMP
Ga0209010_100000567F000151GGAGGMQHGANGSNGTGNGTLLHTGDPHVQEVVKTAHEELRQLMRQRAEIMKRIGTLKQTISGLANLFGDEILGEDLLELVDRKTGGRQPGFTKACRMVLMEAGRPLAVREVCEQIQQRLPTILVRHKDPLASVTTVLNRLVEYGEALSVVRENGRRAWQWVSDPVPVERSTIPISQL
Ga0209010_100000572F004611N/AVDQFESVAKPLYKCEEQNLVADSPSYSRRWSVIASALLCCGLGVVVLYTKRSAFFSPLAVVVVAAIGLVAVLLQLRFYNRGHSNPVRAPVWLNILGVGFALTAFFADFLGLSWQMAEVMALGAVGSFAISSAMILHAFRKNRVTSK
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