NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209010_1000008

Scaffold Ga0209010_1000008


Overview

Basic Information
Taxon OID3300027370 Open in IMG/M
Scaffold IDGa0209010_1000008 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)216636
Total Scaffold Genes206 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)156 (75.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011967Metagenome / Metatranscriptome285Y
F012246Metagenome / Metatranscriptome282Y
F024877Metagenome / Metatranscriptome204Y
F034262Metagenome / Metatranscriptome175Y
F085958Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209010_100000843F024877GGAGGMEIEGLEIIRLELKYCERCGGLWMRTWGTEDAYCPACAVEVLDLPIGGRRRKLRLLVNDRVDLKSQGEDWSAVCGEGGNA
Ga0209010_100000845F034262AGGMSKAKSTRVRKRPKRAPSVPKKALKRVDLGVIGERITNLVGNRAIEMVQITIDEVNKGHYLAMKYLFEMIGLCPATAPEGEIQEDSLAKTLLRRLRFPEETDAGNEVTKECVSEPVEQEQESDAVK
Ga0209010_100000848F011967GAGGMNPNDQCNSVSLKEHLLSLIAIERELANRERTFVGLRFELAERALQLDHVEMLRRLELLNHAHEDARQKEASFVGREVYESQVKENNKWRDEVNSALSNRQGKASVTSGLAGAIGGLALSALFGLFMYFAKALLIGFPK
Ga0209010_100000868F085958GGAGMSIAHRIFSAFCLAALFSALSVAQAPSGDANITRLNVDDSLNGWKPVCVLPSCNPGGNGIPTKTSHTIDHVHPSKDGHSMEVSITGPEYSNALWTYVAGADDSATSLSTSLWVYLTDKASVAGSFEFDQFDFSKSEGIEFMWGSQCNQVNGLWQVFDQLHGHWMDTAVKCALKPNQWHHVRWDVHRVSGDTDRCSGKPCMYYDTLMVDGVVHPVNAVYPAGSLPHGWSSAVGFQVQIDIGSTGQPVTVDEYIDLADFWAM
Ga0209010_100000877F012246AGGAGMKLSSNSISKSKTVLAMVLSISLIATGCSAQWISVALADLPVLTQMALNIGTIITTLESGQQISPGEAAAIQNISAQAGKDLNLLATLYNEYKANPSASVLQKIQSAIADINQGLPALLQAAHISDPILSSRLAAGVNLILTTVASFAALIPQTSTQLVAAKVTRSQVTIPKASDLKKQWNQQVCGPTSNSALDFGAAGCTVR
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